mcp-alphafold
AlphaFold predicted protein 3D structures (EBI)
Part of Pipeworx — an MCP gateway connecting AI agents to 250+ live data sources.
Tools
| Tool | Description |
|---|---|
prediction |
Full prediction metadata + structure file URLs (PDB, CIF, PAE). |
summary |
Short summary for a prediction (organism, sequence, mean pLDDT). |
annotations |
Sequence-level annotations (e.g. MUTAGEN, LOW_CONFIDENCE_REGIONS). |
uniprot |
Alias for prediction — fetch by UniProt accession explicitly. |
Quick Start
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"alphafold": {
"url": "https://gateway.pipeworx.io/alphafold/mcp"
}
}
}
Or connect to the full Pipeworx gateway for access to all 250+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}
Using with ask_pipeworx
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Alphafold data" })
The gateway picks the right tool and fills the arguments automatically.
More
License
MIT
